PTreeGenerator  1.0
Simple phylogenetic tree generation from multiple sequence alignment.
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Functions | Variables
ptreegen.enums Namespace Reference

Functions

def enum
 Definition of the enum "type".

Variables

tuple TreeBuildAlgorithms
 This enum contains possible algorithm choices.
tuple SeqTypes
 This enum contains possible sequence types.
tuple DistMeasures
 This enum contains possible distance measures.
tuple OutputForm
tuple TreeType

Function Documentation

def ptreegen.enums.enum (   enums)

Definition of the enum "type".

Definition at line 8 of file enums.py.

8 
9 def enum(**enums):
10  return type('Enum', (), enums)

Variable Documentation

ptreegen.enums.DistMeasures
Initial value:
1 enum(
2  P_DISTANCE = "P_DISTANCE",
3  POISSON_CORRECTED = "POISSON_CORRECTED",
4  JUKES_CANTOR = "JUKES_CANTOR",
5 )

This enum contains possible distance measures.

Definition at line 22 of file enums.py.

tuple ptreegen.enums.OutputForm
Initial value:
1 enum(
2  NEWICK = "NEWICK",
3  IMAGE_PNG = "IMAGE_PNG",
4  IMAGE_SVG = "IMAGE_SVG",
5  GUI = "GUI",
6  PRINT = "PRINT",
7 )

Definition at line 28 of file enums.py.

ptreegen.enums.SeqTypes
Initial value:
1 enum(
2  DNA="DNA"
3  , RNA="RNA"
4  , AA="AA"
5 )

This enum contains possible sequence types.

Definition at line 16 of file enums.py.

ptreegen.enums.TreeBuildAlgorithms
Initial value:
1 enum(
2  NJ="NJ"
3  , PARSIMONY="PARSIMONY"
4 )

This enum contains possible algorithm choices.

Definition at line 11 of file enums.py.

tuple ptreegen.enums.TreeType
Initial value:
1 enum(
2  CIRC = "CIRC",
3  RECT = "RECT",
4 )

Definition at line 36 of file enums.py.

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