Packages

Here are the packages with brief descriptions (if available):

combination_utils	Contains functions that generate different kinds of combinations from an iterable
computation	Contains just the ptreegen::computation::Computation class
distance_functions	Contains implementations of possible distance measures
distance_matrix	Constains just the ptreegen::distance_matrix::DistanceMatrix class
enums	Contains all enums used in the project
main	The main module with the main method
neighbor_joining	Contains just the ptreegen::neighbor_joining::NeighborJoining class
parsimony	Contains two classes (ptreegen::parsimony::SmallParsimony and ptreegen::parsimony::LargeParsimony) that implement the basic steps of the parsimony approach to tree building
ptreegen	This package contains all that is needed by the main module to do its thing :)
tree_utils	Defines a number of functions that can be used to manipulate a tree
utilities	Contains some universally usefull stuff
visualization	Contains just the ptreegen::visualization::Visualization class